zjnolen/PopGLen

Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.

Overview

Topics: snakemake bioinformatics bioinformatics-pipeline genotype-likelihoods population-genomics whole-genome-sequencing museomics angsd

Latest release: v0.4.1, last update: 2025-01-20

Linting: failed

Formatting: passed

Configuration

Configuration

Use the template config.yaml to customize the workflow to your dataset. You can find information about how the configuration works in the pipeline's documentation in the "Configuration" section.